PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr020024.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 180aa    MW: 20422.3 Da    PI: 9.1667
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr020024.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-18755254
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                 +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + 
  Pbr020024.1  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 55
                 69******9.**********8.....334**********************8775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.88E-35666No hitNo description
Gene3DG3DSA:3.30.730.101.7E-34764IPR001471AP2/ERF domain
SMARTSM003801.3E-41770IPR001471AP2/ERF domain
PROSITE profilePS5103221.14764IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-21766IPR016177DNA-binding domain
PfamPF008471.9E-11756IPR001471AP2/ERF domain
PRINTSPR003672.8E-11819IPR001471AP2/ERF domain
PRINTSPR003672.8E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MARPQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGPRAR  60
TNFPYNPNAS QSSASKLLSA TLTAKLHRCY MASLQMTKTS LQEPKKPKTL VSSGAKMPEM  120
IRPEIQQGGE ENWVVREVKV ESSSQQFKPL EDDHIEQMIE ELLHYGSIEL CSVVPPQPT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A3e-18871670ATERF1
2gcc_A3e-18871670ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00526DAPTransfer from AT5G25190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324450.0GU732445.1 Malus x domestica AP2 domain class transcription factor (AP2D21) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009363957.11e-133PREDICTED: ethylene-responsive transcription factor ERF003
SwissprotQ94AW52e-82ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLD5L1051e-121D5L105_MALDO; AP2 domain class transcription factor
STRINGVIT_04s0008g06000.t012e-91(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.18e-61ERF family protein